rs52125873 SNP Detail

Summary

• ID
  rs52125873
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:7829390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAATAGAT TCTGTTCCAA
  ATCTCCTATA TCCCTGCTTC CTATTCATGC CACCTTCCTT TCCAACTCCC AGCGACCTTT
  GGTCACTCTG GATAGTCTTT TCTTTTCTAG AAAATCAGCT GGTTGTAATC ATGCAGCACA
  TAGTCTTTTG AGATGTTTTT TTTTTTTTTT TTTTTTTTTT TTTTCTTAGT AGCATGCCTG
  K
  AAGACTCCAT TGTATCTTTT AGTATCTTGG CATTTTTTTT TTTTTTTTTA CTGTTGAATA
  GCATTTGTAC TGATACTGAT ATCATTTCTC TGACCAATTA CCCAACAGGA ACAACCTAAG
  AAAGGAAAGG TTTATTTGGA CTCATGGTCC CAGAGAAATT TCAATCCGTT GTGATAAACA
  AAGCAGGGTG GCAGAATCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss132955687	ENSMUSSNP626314	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52125873					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:7829390 () rs orientation: forward

Symbol	Name	Function Class
Rr626323	regulatory region 626323	1458 bp proximal