rs52124039 SNP Detail

Summary

• ID
  rs52124039
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34521006 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTACAGAC CAGTGAGTAC
  ACAGCAACTC ACAATCCCCC AGAACTCCAA GATCTAACAG CCTCTTCTGA CTTGGTGGCC
  ACCAGGCATA TACATGCAGG CAAATACGGA AAATAAAACT GCAGGACCCT TAAAAACAAA
  ACAAAACAAA CAAACAAACA AAAAAACCCA AAAAGCCAAA ATAAAAACAA CAGCAAAAAG
  W
  CTTATAAATT GTCAGTAGAC TTGCAGCCAA AACTTCAAAG AAGAGAGTAT TTTAAATAAA
  TGTACAACCT TCCCAGCAGT TCGAGACACC GTCCCAAGCC AATCGAGACA GGCTAGCCCG
  GTTCCCTGTA CCATCACCAA TCAGATCAAT CACCTCATAG CCTCAGGAGG ACACTGTCGA
  AGGTAAGCGG TACAGAACAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60386386	NES15889051	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52124039					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60386386	NES15889051	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34521006 () rs orientation: forward

Symbol	Name	Function Class
Rr575137	regulatory region 575137	923 bp distal
Rr575138	regulatory region 575138	191 bp distal