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rs52124039 SNP Detail
Summary
  • ID
    rs52124039
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr3:34521006 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AACTACAGAC CAGTGAGTAC
    ACAGCAACTC ACAATCCCCC AGAACTCCAA GATCTAACAG CCTCTTCTGA CTTGGTGGCC
    ACCAGGCATA TACATGCAGG CAAATACGGA AAATAAAACT GCAGGACCCT TAAAAACAAA
    ACAAAACAAA CAAACAAACA AAAAAACCCA AAAAGCCAAA ATAAAAACAA CAGCAAAAAG
    W
    CTTATAAATT GTCAGTAGAC TTGCAGCCAA AACTTCAAAG AAGAGAGTAT TTTAAATAAA
    TGTACAACCT TCCCAGCAGT TCGAGACACC GTCCCAAGCC AATCGAGACA GGCTAGCCCG
    GTTCCCTGTA CCATCACCAA TCAGATCAAT CACCTCATAG CCTCAGGAGG ACACTGTCGA
    AGGTAAGCGG TACAGAACAC                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss60386386 NES15889051 PERLEGEN MM_PANEL2 f SNP A A A A A A A A A A A A A A T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs52124039 SNP A A A A A A A A A A A A A A T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss60386386 NES15889051 PERLEGEN MM_PANEL f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:34521006 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr575137 regulatory region 575137 923 bp distal
Rr575138 regulatory region 575138 191 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory