rs52123736 SNP Detail

Summary

• ID
  rs52123736
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:128875770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTGC CTCTGTGTGT ATGTGTGTCT
  S
  TGTGTGTGTG TGTGTGTGTG TGTGT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147577504	ENSMUSSNP5743717	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52123736					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128875770 () rs orientation: forward

Symbol	Name	Function Class
Gm54152	predicted gene, 54152	within coordinates
Rr564832	regulatory region 564832	1810 bp proximal
Vinac1	vinculin/alpha-catenin family member 1	Intron