rs52123338 SNP Detail

Summary

• ID
  rs52123338
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:76298897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAG GGAAGGAGGA GAGTGAAGGA
  R
  GAACAGGGAG GGAGAGGAGC CGAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147529633	ENSMUSSNP6577315	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss325699003	CHEV_18_76325480	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52123338					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:76298897 () rs orientation: forward

Symbol	Name	Function Class
Rr407187	regulatory region 407187	516 bp proximal
Tssr151986	transcription start site region 151986	698 bp downstream
Tssr151987	transcription start site region 151987	677 bp downstream
Tssr151988	transcription start site region 151988	656 bp downstream