rs52122860 SNP Detail

Summary

• ID
  rs52122860
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:165792207 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAT ATGCACACTC ACAAACAGAC
  K
  GAGAGATAGA TAGATAGATA GGTAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148247221	ENSMUSSNP3894874	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320609170	CHEV_2_165775787	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52122860					SNP	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165792207 () rs orientation: forward

Symbol	Name	Function Class
Rr570077	regulatory region 570077	1708 bp distal
Rr570078	regulatory region 570078	126 bp distal
Rr570079	regulatory region 570079	1228 bp proximal
Tssr27663	transcription start site region 27663	469 bp upstream