rs52122187 SNP Detail

Summary

• ID
  rs52122187
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137573447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTAACGGA GGCCCAGGGC
  TTCCCAAGAC CTAAGGGCCA GGAGGCCTGG CCTCTGATCC TTGTGGATCT GGTCGTGAGG
  GTCCCTGTCC CCACCCCGGT GGCGCGGAAG GCGGGCTCCG GGCCACACCG GAGCCTAGGG
  GCCGGGGCGT CCGCGCTCCG CCAACCCACG GCCTCCCCGC CCTCCTCCCG GGTTACCGCG
  W
  CGGCTTTACG GTCCGCCAGG CCCGGGAGGG ACGCGGCTGG CGCCGCTGCG GCCGCGGGGG
  GCGGGGAGGC GGCCGTGAGG AGGCGGAGCT GCGAGGCCGC CCGTCGCCGG GCCGCCGCCG
  CGGTGCCCGC TCCTCCCCGC GCCGTGCCGC GCCGTGCCCC GCCCGGCCGC CTCGCCTCCT
  CCGCGGCGGG CCCCCCTCGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss135944569	ENSMUSSNP6948222	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320976925	CHEV_3_137530650	CHEVERUD	SCREENING_POP	f	SNP		A	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs52122187					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137573447 () rs orientation: forward

Symbol	Name	Function Class
Dnajb14	DnaJ heat shock protein family (Hsp40) member B14	mRNA-UTR
H2az1	H2A.Z variant histone 1	764 bp downstream
Rr398061	regulatory region 398061	1681 bp downstream
Rr586004	regulatory region 586004	1914 bp distal
Rr586005	regulatory region 586005	1316 bp distal
Rr586006	regulatory region 586006	1 bp distal
Rr586007	regulatory region 586007	69 bp proximal
Rr586008	regulatory region 586008	1774 bp proximal
Tssr31916	transcription start site region 31916	1815 bp downstream
Tssr31917	transcription start site region 31917	1748 bp downstream
Tssr31918	transcription start site region 31918	72 bp upstream
Tssr31919	transcription start site region 31919	121 bp upstream
Tssr31920	transcription start site region 31920	173 bp upstream
Tssr31921	transcription start site region 31921	192 bp upstream
Tssr31922	transcription start site region 31922	272 bp upstream
Tssr31923	transcription start site region 31923	376 bp upstream
Tssr31924	transcription start site region 31924	391 bp upstream
Tssr31925	transcription start site region 31925	435 bp upstream