rs52117618 SNP Detail

Summary

• ID
  rs52117618
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:20709953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAGAAAG GTGCTCGTGA
  CAGGATGATA ATCTCAAACA CAAAGTCCAG GGGGAATTAG GCAGCAATTG AAGCTGTCAG
  CTGAGTAGGT GCATGAAAAA TGTAAGAAAA CCTCCCCCAA GTTACATAAT GTTGAGAACA
  ACATATAAAA GAAAGATAGT AGCAAAAACA TAAGAAAATG ACAAAACAAA ACAGCATCAC
  R
  ATCATACTCC CAATATAGTG GGAACAGATG TTTGAGGTTG GTCATTCTGA GATGATCACT
  GTGCAGATTA TAATGATTCA CCTAGACATT CCATGATGCT TAGACGATAG TGACCAGAGG
  CAGAGGAAGG AGTTGTCTGG TTCTTCATTT GGGATATTTG TACTTATAAA CAACCCATCT
  TTTCAGCTCC ATTTCACTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60378021	NES15881139	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs52117618					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60378021	NES15881139	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:20709953 () rs orientation: forward

Symbol	Name	Function Class
Rr574089	regulatory region 574089	14 bp distal
Rr574090	regulatory region 574090	303 bp distal