rs52117000 SNP Detail

Summary

• ID
  rs52117000
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:85432877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTGTTTTTA AACGTTTTCT TCAGCCCTCC CACCGAAACC
  GAACGACGAA ACAAATTTAA ACCCCAGATT ATCCTCGTCA ACGCAGGAAA AAAGGCAAAA
  A
  AAAAAAAAAA AAACAAAAAA AAAACCAACC AACCAAACCA ACAAACAAAA ACCCAGAAAA
  CTATCAAAAA GGAAAACAAA CAAAAAAAAA AACAAAAAA                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145392358	ENSMUSSNP1115903	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52117000					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85432877 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lyl1	lymphoblastomic leukemia 1			1308 bp downstream
Nfix	nuclear factor I/X			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr368567	regulatory region 368567			1622 bp downstream
Rr666588	regulatory region 666588			1641 bp distal
Tssr82117	transcription start site region 82117			1110 bp upstream
Tssr82118	transcription start site region 82118			1073 bp upstream
Tssr82119	transcription start site region 82119			1046 bp upstream
Tssr82120	transcription start site region 82120			970 bp upstream
Tssr82121	transcription start site region 82121			421 bp upstream
Tssr82122	transcription start site region 82122			188 bp upstream
Tssr82123	transcription start site region 82123			39 bp upstream
Tssr82124	transcription start site region 82124			within coordinates
Tssr82125	transcription start site region 82125			63 bp downstream
Tssr82126	transcription start site region 82126			252 bp downstream