rs52115972 SNP Detail

Summary

• ID
  rs52115972
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152496976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATGTATGTA TGTATGTATG TATGTATGTA TGTATGTATT
  TATAATTATC ATTTTATGTT ATATGCATTT ATGTATTAGA AAAGAGATTA ATGTCACAGA
  K
  AGACAGGCAA CAGCATACAG AGGCTCCAAG GAGAGCTCAG ATCAGCATGA CAGAGTAAAA
  GTCTCCTCTT AAATACTTGA GAGGAAGAGG GAGGGGAACT                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C3H/HeJ	KK/HlJ	PWD/PhJ	WSB/EiJ
ss61101172	NES16612849	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	G	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C3H/HeJ	KK/HlJ	PWD/PhJ	WSB/EiJ
rs52115972					SNP	T	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61101172	NES16612849	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152496976 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pigk	phosphatidylinositol glycan anchor biosynthesis, class K			Intron
				Noncoding-Transcript-Variant
Rr587606	regulatory region 587606			561 bp proximal