rs52112496 SNP Detail

Summary

• ID
  rs52112496
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:84216619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAGTGGTAG AAGAGTGAGC CAGAATGAGC AAGATCCTAG
  ATTCAATGTA CACACACACT CATACACTCT CACACACATA CACACTCATA TACTCACACA
  K
  TTACATGCAT ACACACTCGT ACACACACAC TCATAACTCA CACACACACA CACATTCAGA
  CACACACACA CATACACACA GGAAATGAAA ACAAAAAGG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146830283	ENSMUSSNP494850	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320371266	CHEV_2_84226432	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52112496					SNP	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84216619 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Calcrl	calcitonin receptor-like			Intron
				Noncoding-Transcript-Variant
Gm74802	predicted gene, 74802			1291 bp upstream
Rr560244	regulatory region 560244			682 bp distal
Rr560245	regulatory region 560245			801 bp proximal
Rr560246	regulatory region 560246			1302 bp proximal
Rr560247	regulatory region 560247			1810 bp proximal
Tssr24971	transcription start site region 24971			914 bp downstream