rs52107964 SNP Detail

Summary

• ID
  rs52107964
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141874949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCG GGTCCTCCGC GCCCTCACTA
  Y
  GAGCACCACG CCGGCAACTT CTGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss61088439	NES16600651	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		C	T		C
ss320998846	CHEV_3_141832152	CHEVERUD	SCREENING_POP	f	SNP											T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs52107964					SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61088439	NES16600651	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141874949 () rs orientation: forward

Symbol	Name	Function Class
Bmpr1b	bone morphogenetic protein receptor, type 1B	mRNA-UTR
Rr586389	regulatory region 586389	within coordinates
Rr586390	regulatory region 586390	15 bp proximal
Rr586391	regulatory region 586391	111 bp proximal
Rr586392	regulatory region 586392	270 bp proximal
Tssr35928	transcription start site region 35928	8 bp downstream
Tssr35929	transcription start site region 35929	123 bp downstream