rs52102044 SNP Detail

Summary

• ID
  rs52102044
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127648065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCATCTTG GAGACCTAGA
  CAGGGTTGAG TTCCCTCTGC CAGCAGTAGT TTAGGAAGAT CTCTTCCCTT GCCAGAGGCA
  GTAGCTTCGA GCACAGGGCC CTAGTTCTAC CGAGAGTCAG TCCCTGGAAT CCTGAAGGCA
  GCCATCTCTT CCTCTTCCTC TTCCTCGTCT TCCCCCTTCT CCTCCTTCTT TTCCTCCTCC
  Y
  CAGAATCCGG GAGTGTCCTG CATTCCAAAG CCCAAATTTG CTGGGCACCA GATGGGTCCC
  AATTGTTGAT ATTTTCTTTC TGCTGTTGTT TCCCCATGTT TGTCTCTAAT TTTACTAATC
  TGGATCTTCT CTCTCCACCT TTTAGTTAAT CTGACTAGAT GTTTATCAAG CTTACTGATT
  TTTTTTCAAC CAACCATTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320957519	CHEV_3_127557334	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52102044					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127648065 () rs orientation: forward

Symbol	Name	Function Class
Rr584884	regulatory region 584884	1117 bp distal
Rr584885	regulatory region 584885	247 bp distal
Rr584886	regulatory region 584886	883 bp distal