rs52101857 SNP Detail

Summary

• ID
  rs52101857
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:71762317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAGAAAAAA GAAAAGGAAA GAGGAAAGGA AAGGAAAGGA
  GAGGAGAGGA GAGGAGAGGA GAGGAGAGGA GAGGAGAGGA GAGGAGAGGA GAGGAGAGGA
  R
  AGGAGAGGAA AGGAAAGAGG CAGACAATGT TGTTCTAATT CCCAAGAGTT GCCCTGGGCA
  CAGTCCTAAT TATACCAAAC CTATTATTAA AGTCAGCCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321818360	CHEV_6_71735327	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52101857					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71762317 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Reep1	receptor accessory protein 1			Intron
				Noncoding-Transcript-Variant
Rr632004	regulatory region 632004			1312 bp distal
Rr632005	regulatory region 632005			1468 bp proximal