rs52101447 SNP Detail

Summary

• ID
  rs52101447
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:133963783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTCCTCCTC CTCCTCTTCT TCCTCCTCTT CCTTTTCCTC
  CTCTCCTTCT TCCTCATCTT CTTCTTGTTC TCCCTCCTCC TCTCTCTCTC TCCTTTTCTC
  Y
  TTTTAAAGAT CTGTTTACTT TTTACCTCTG TGTGTGTCTG GGGGTAAAGA GTATGTCAAC
  TTGAGTGCAG GTGCCCTGGA AAGCCAGAGG CACTGGATG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133768843	ENSMUSSNP4472935	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss321975829	CHEV_6_133936838	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52101447					SNP	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:133963783 () rs orientation: forward

Symbol	Name	Function Class
D6Mit290	DNA segment, Chr 6, Massachusetts Institute of Technology 290	232 bp distal
Rr380154	regulatory region 380154	within coordinates
Rr639549	regulatory region 639549	1464 bp distal