rs52098225 SNP Detail

Summary

• ID
  rs52098225
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:69662900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATGGGGGTG GGTATTGTCT GTTGGCTGGC AAAACTTATA
  TGTATGCTCA AGGTCTGCAG TTTTCTATCA GTATACAAGG GTTTCTCTTT TTTGACTTTG
  S
  CAAACACTTT TATAATATTA TAGGGTTTTC CATTTTAATT TTTTGTCAGC TTGGAAGGTG
  ACAAAAGTAG TGTTCATTTT AATTACATTT GTTAGATTA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135271356	ENSMUSSNP1907388	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320793809	CHEV_3_69559489	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52098225					SNP	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69662900 () rs orientation: forward

Symbol	Name	Function Class
9530051E23Rik	RIKEN cDNA 9530051E23 gene	within coordinates
Rr375162	regulatory region 375162	within coordinates
Rr578222	regulatory region 578222	103 bp distal
Rr578223	regulatory region 578223	210 bp distal
Rr578224	regulatory region 578224	847 bp proximal
Rr578225	regulatory region 578225	1084 bp proximal