rs52092890 SNP Detail

Summary

• ID
  rs52092890
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135905476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAATCTCAG CCACAGGCTC AAAGCAAGAA
  TCTCAGCTTG CTGCTTGTCA GTGAGAATAA ATGTTTATGT CTAACTGATA AAAATGCTTT
  Cctctctctc tctctctctc tctctctctc tctctctctc tctctctctc tctctctctc
  W
  cacacacaca cacacacaca caTGGGGAAA agagagagag acagagagat agacagagac
  agagagacag agacagagGA ACAGGCAGGC AGGCAGACTT TAGATGCAAT CATTTCTCCT
  AAATTTTCAT AGGGAATCTT GAATCTTATT                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss135931485	ENSMUSSNP675794	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320972787	CHEV_3_135862679	CHEVERUD	SCREENING_POP	f	SNP		T	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs52092890					SNP	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135905476 () rs orientation: forward

Symbol	Name	Function Class
Bank1	B cell scaffold protein with ankyrin repeats 1	Intron
Gm66328	predicted gene, 66328	within coordinates
Rr585811	regulatory region 585811	163 bp distal