rs52092857 SNP Detail

Summary

• ID
  rs52092857
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:97856927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAATGAA GCTCGCCAGA
  GCTTGGTGTG CAGGGCTTTT ATTAGGGTTC AAATAATCTC TCTGTGAGCT GAGTTTTATT
  AAGTACTCAG ATGCCAGAAC CTCCTCCCTA GTCAAAGAAG CATTTACTGT AAAAAATCAT
  GCCACTAGCA TAACTGGTCC TGGTAAATTT GTGTAGTCCA AGGTTCCACA GTTATAAAAA
  Y
  AGATATTCAC TATAAGTAAC ATGAAACTAA AACTCCATGC ATATAGAAAC ACAATGAATA
  GAAGAATAGA ATAGAATAGA ATGGAATGGA ATAGAATAGA ATAGAAGCCT CTCCTGCATT
  CTCTGGTGTT GACCAACTCT GTCCTTCTGA GCTGATTTTT TCTTTCATTC TCTTGTATCT
  TGTAATCTGT CACTGGAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60915320	NES16222766	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs52092857					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60915320	NES16222766	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97856927 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	Intron
Rr635232	regulatory region 635232	1979 bp distal
Rr635233	regulatory region 635233	447 bp proximal
Rr635234	regulatory region 635234	1965 bp proximal
Tssr57900	transcription start site region 57900	549 bp upstream