rs52090331 SNP Detail

Summary

• ID
  rs52090331
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:41353861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAACA GCCAGGTAGT GGTGTCATAC
  A
  CTTTTAGTTT ATGTGTTGCC AAAGC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146402120	ENSMUSSNP604111	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52090331					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:41353861 () rs orientation: forward

Symbol	Name	Function Class
Pik3ap1	phosphoinositide-3-kinase adaptor protein 1	Intron
Rr547615	regulatory region 547615	256 bp proximal
Rr547616	regulatory region 547616	955 bp proximal
Rr547617	regulatory region 547617	1721 bp proximal
Tssr159300	transcription start site region 159300	1769 bp upstream
Tssr159301	transcription start site region 159301	1570 bp upstream
Tssr159302	transcription start site region 159302	1487 bp upstream
Tssr159303	transcription start site region 159303	1465 bp upstream