rs52088500 SNP Detail

Summary

• ID
  rs52088500
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:124069832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATTTTTGT CTTTCTGAGT
  TTGGGTCACG TCGCTCAGCA TATTTTCTCT TTGATTTCAC ACTGGGAAGC TGCCATTCAG
  TGAGAACCGC GTGCCCACAC TGGAAAAGTG AGTCGCAAAC ACCCCGTGTC ATTTACTTTG
  ATTGAGGACA TTTGTGGAGA GGTTTACTGT TCGGTGGGTA GAATTTTTCT GTACTAGCTT
  W
  AAAATCCTAA CTAGGTTTTT TGTTTTTTTT GGGGGGGGTC TTTTTTGTTT GTTTGTTTGT
  TTGTTTTTGT ATTCTTGGGC AGCTCAAGTC TTTCTGAGCA CCGATCCAAC GCTACAGGCT
  CCCACTCACT GCATCCTCGG TGTGTGAGTC CACGATACTC TTTGTTTCAG TAAACATTTG
  CTTTCGTTCA ACATGGAATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss135783774	ENSMUSSNP784028	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs52088500					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:124069832 () rs orientation: forward

Symbol	Name	Function Class
Gm43731	predicted gene 43731	within coordinates
Rr584585	regulatory region 584585	905 bp distal