rs52084693 SNP Detail

Summary

• ID
  rs52084693
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8415940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTGGGCTTT CCTCCAGAGC GGGGAGTCAC ACCGTGCACT
  GCATAACAGC ACACAAAAGA AGCCAGCAGA GTGCCATTGT GCCATTGTGC CATTGTGCCA
  W
  TGTGCCATTG TGCCATTGTG CCATTGTGCC ATTGTGGCCG GAAGGGTTAG GGATTATAGA
  CTTCCCCAAA CAAGATCCAA TGCTTTCACT TAGGCTTAG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss132968444	ENSMUSSNP765901	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss321736715	CHEV_6_8365940	CHEVERUD	SCREENING_POP	f	SNP		T	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs52084693					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8415940 () rs orientation: forward

Symbol	Name	Function Class
1810015A16Rik	RIKEN cDNA 1810015A16 gene	158 bp downstream
Gm45062	predicted gene 45062	Intron
Rr626391	regulatory region 626391	1250 bp distal
Rr626392	regulatory region 626392	981 bp proximal
Umad1	UMAP1-MVP12 associated (UMA) domain containing 1	Intron