rs52083740 SNP Detail

Summary

• ID
  rs52083740
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:66989912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGACCAGAG GATCCATGGT
  GGGGCCATTT CAAGAAGCAG TGTTTGCTTT GCCTGTCAGT GGGATGGATA AGCCTGTGTT
  TACAGACCTA CCAGTTAAGA CAAAATTTCG ATATCATATT ATTATGATTG AAGGGAGAAA
  ATAAAATCAC ATAAAAGACT GAAAAAAAAA GAAAGAAAGA AAAAACAAAC CTAGGAAGAG
  S
  CCTCTCTCAG TGGTGAGAAA AAATACCTAC CTTTTGAGAC CCTGCTTCAA AAGGGGGACA
  GGAAATTGCC CAGCTTGGTA GCTTGTGCCT CTAGTTCCAG CTGTTTGGGA GGTTTCAGGA
  GGATGGCCTA CGCCTAGGAG ACTGGAGCCA GCCTAGGCAA CATAGTGAGG ACATGCTCCC
  CCACCACACA CCTCATTAGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60892252	NES15964050	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C	G	C	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52083740					SNP	G	G	G	G	G	G	G	G	G	C	G	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60892252	NES15964050	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:66989912 () rs orientation: forward

Symbol	Name	Function Class
Gm15644	predicted gene 15644	57 bp downstream
Gng12	guanine nucleotide binding protein (G protein), gamma 12	Intron
Rr631574	regulatory region 631574	111 bp proximal