rs52081113 SNP Detail

Summary

• ID
  rs52081113
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:22715235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAAACTGT GCCAGACCAT
  AGCTTCTCCT CTCCATCCCT CCCACCCTCC CTCTTACCTT CCTTCCTCCT CTCCTTTGCT
  CCCTCCCTCC CTCTCCCTCC TCCTCTCTGT CACTTCCTCC CTCTATCCCA CCTCTCCTTC
  CCCCCTCCCT CCCTCTGTCC CACCTCTTCT TGCCCCTCTT GTTCCAGACC ATCTTTCCCA
  Y
  GTGTTCTCAT TTTCATTCTC AGCCTCTCCC AGTGTCTACT CTGGTGGAGT TTGTAATAGC
  TGCCACTGAC TGTACTGCAA AAGAAGTCAC AGATCCAGCC AAATGCAACC TGCTGGCAGA
  GAAGGTGAGT GGGCCAGACC CTAGGGCTCC CAATCTGGTT GTGGAACAAA GTATCTTTTT
  GCAGTTTATA TCTTGGGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63681295	NES17064305	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52081113					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63681295	NES17064305	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:22715235 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ahsg	alpha-2-HS-glycoprotein			Intron
				Noncoding-Transcript-Variant
Rr513337	regulatory region 513337			1689 bp distal
Tssr4819	transcription start site region 4819			1144 bp downstream
Tssr4820	transcription start site region 4820			528 bp downstream
Tssr137567	transcription start site region 137567			1700 bp downstream
Tssr137568	transcription start site region 137568			1669 bp downstream
Tssr137569	transcription start site region 137569			1648 bp downstream
Tssr137570	transcription start site region 137570			1631 bp downstream
Tssr137571	transcription start site region 137571			1293 bp downstream
Tssr137572	transcription start site region 137572			1194 bp downstream
Tssr137573	transcription start site region 137573			1184 bp downstream
Tssr137574	transcription start site region 137574			1165 bp downstream
Tssr137575	transcription start site region 137575			1155 bp downstream
Tssr137576	transcription start site region 137576			470 bp downstream
Tssr137577	transcription start site region 137577			53 bp downstream
Tssr137578	transcription start site region 137578			8 bp upstream
Tssr137579	transcription start site region 137579			1630 bp upstream
Tssr137580	transcription start site region 137580			1680 bp upstream
Tssr140506	transcription start site region 140506			1624 bp upstream
Tssr140507	transcription start site region 140507			1261 bp upstream
Tssr140508	transcription start site region 140508			1219 bp upstream
Tssr140509	transcription start site region 140509			1201 bp upstream
Tssr140510	transcription start site region 140510			1153 bp upstream
Tssr140511	transcription start site region 140511			1139 bp upstream
Tssr140512	transcription start site region 140512			72 bp downstream
Tssr140513	transcription start site region 140513			83 bp downstream
Tssr140514	transcription start site region 140514			116 bp downstream
Tssr140515	transcription start site region 140515			1691 bp downstream
Tssr140516	transcription start site region 140516			1710 bp downstream