rs52078279 SNP Detail

Summary

• ID
  rs52078279
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155967075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGCGGTGTT GGTGGTTAGT GGTCATTCAA GGGGGTTGGT
  TGTAGTTTGT TAGTAGTTGT GCTCAAAGAT GAAACAAGAA GAAAGAAATT ATATTCCTCC
  Y
  CTTCTTTTCC CCCCTCTCCC TCTCTCTCTA CTTCTCTCCC ACTCTTCTCT CTCCTTCTTT
  CTCTCCTATC TAGTGATGGG GGTGAAATCA GGAAGATAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148119299	ENSMUSSNP5182792	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321443587	CHEV_4_155256727	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52078279					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155967075 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ints11	integrator complex subunit 11			Intron
				Noncoding-Transcript-Variant
Rr606604	regulatory region 606604			1168 bp distal
Rr606605	regulatory region 606605			1035 bp proximal