rs52078192 SNP Detail

Summary

• ID
  rs52078192
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113599903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGATGAAAC TTCTGCCAGA
  AATGTCTATG GAAAAATGGC ACTGAATGTT ATCTGATAGT AGTTGTATGC TAATTCTTTG
  AACCAGTCAT GGTAGCACAT ATCTAGAATG CCAGTACTTG GGAGGCAGAC ACAGGAGTGC
  CACTAATTTG AGGCCAGCCT GGGCTATATA TATTCAGCTG CAAGGCAATG GGAACTATGC
  R
  ATAAGTCTGC GTCTAAAAAG AAAAAGACAA AATATTTTAA AATTCTATTC ACAAACATAA
  AAAAGTTTGA AAGGAAACAA AAACTGGTAA TACTGTTTTC TGGGAATGCA GATGGAAAAG
  GAGGGAAAGT TTTACTTTTG TACTCTGGAA GACATTTTGA AATGTGTAGT TAAAAATAGA
  GACAGACTCA AACTCATCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss133564902	ENSMUSSNP1205382	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
ss321911143	CHEV_6_113572936	CHEVERUD	SCREENING_POP	f	SNP			A		G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs52078192					SNP	A	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113599903 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17851	CpG island 17851	729 bp proximal
Rr636555	regulatory region 636555	639 bp proximal
Tssr58233	transcription start site region 58233	1046 bp upstream
Tssr58234	transcription start site region 58234	1106 bp upstream
Tssr58235	transcription start site region 58235	1184 bp upstream
Tssr58236	transcription start site region 58236	1725 bp upstream
Tssr62461	transcription start site region 62461	586 bp downstream
Vhl	von Hippel-Lindau tumor suppressor	1052 bp upstream