rs52077422 SNP Detail

Summary

• ID
  rs52077422
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178306780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAAGCAAAT TAAGGGCGGA GGGAGGGGGG ACAGGTCTGT
  ATTGGCTTAC AGTCTAACAA GGTGGGGAAG ACCGCAGCCC AAGTGTATGC TAGCTTTCTG
  Y
  ATTGTATTGT ATTGTATTGT ATTGTATTGT ATTGTATTGT ATTGTATTGT ATTGTATTGT
  ATTGTATTGT AGTCAGGAAG CAGAGGCTAG ATAGGAATC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148367483	ENSMUSSNP2281037	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52077422					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178306780 () rs orientation: forward

Symbol	Name	Function Class
Gm35695	predicted gene, 35695	within coordinates
Gm74926	predicted gene, 74926	1119 bp downstream
Rr397573	regulatory region 397573	within coordinates
Rr572448	regulatory region 572448	within coordinates
Rr572449	regulatory region 572449	190 bp proximal