rs52074963 SNP Detail

Summary

• ID
  rs52074963
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153366051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGCGGCT ACAGTTTAAC
  ACTGAGAGTT GGGACCTAGG AAACACCGTA GCAAGTTGTT CTAAGAACAG GGTCTTGAGT
  ATGAGCTCAA GGATGCCAGA CTTGATTCAC AGACATCACT GAGCCAAGGG AGCTTCTCTG
  AGAAATGTCT GTGAGAGGCA GGGCAGAAAA AGGGAGCCAT CAGGTTAGCT CCAGCTGGGG
  W
  GATTCATCTT CGGATGCATA AGACCCCGTA TGGGACAGAA AGGGGATCAG AGGCTGGAGG
  AGGAGGAGGA GGAGGGAGAG GAGGGGGAAG GGGAAGAGGG GAAGAGGAAG AGGAAGAGGA
  AGGGAAGGAG GGGGAGGAGG AAGAACAGAA AAAAGGAGGA GGAGGGGAGG AGGAAGAGGA
  AGAACAGGAG GAAGAGGGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136110591	ENSMUSSNP6685769	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52074963					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153366051 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587719	regulatory region 587719			1554 bp distal
Rr587720	regulatory region 587720			1821 bp distal
Rr587721	regulatory region 587721			275 bp distal
Rr587722	regulatory region 587722			1588 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant