rs52072284 SNP Detail

Summary

• ID
  rs52072284
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95184256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCAAGTAC AAGATGAGTC
  ACTAGGAATA GGAGCTCACT TACAAACAAA AACAAACAGA AAACAGGCTT TCCTTTCCCC
  CCTTTCCCTT GCTTATTTTT GGTTGTTTTC AAGACATGGT TTTACGCCTA GCTCCTTGGT
  TTTTTGTTTA TTTGTTTACT TTTTCCAAGA CAGGGTTTCT CCGTGTAGCC CTGGCTGTCC
  Y
  GGAACTCATT GGGTACACCT GCCTCTGCCT GGGATTAAGT GACAGGATTA ATGGTGTGTG
  TCACCAGGTC ACCAGTACCA GTCCCTTTCT GGTCTTCTTT TTACACAGCC CAGGTCTAGG
  AACCTATTCT GTAGTCCAGG GATCTTTCCA ACTCAACCTC AGCCACTAAG CCCAGCTATG
  TAGATTTCCT TTCAGTGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135510464	ENSMUSSNP208564	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52072284					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95184256 () rs orientation: forward

Symbol	Name	Function Class
Prune1	prune exopolyphosphatase	Intron
Rr580884	regulatory region 580884	12 bp proximal