rs52071831 SNP Detail

Summary

• ID
  rs52071831
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147900138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGTGGAAA AGGTGCTGGA
  ATAAGAGATT CAACAGTTCA CAGATCAGAC TGAACAGCAA AGAGAAAATA CAACCTTTTA
  CAATTAATCA ATCAAAATAA AATGGAGAAC AGAATATCAG AATTACAATA TAAAGAAAAA
  AAAATTTTTG TTTTGTTTTT TGTTTTTCAA GACAGGGTTT CTCTGTATAG CCCTGGCTGT
  T
  CTGGAACTCA CTCTGTAGAC CAGGCTGGCC TCAAACTCAG AAATCAGCCT GCCTCTGCCT
  CCCGAGTGCT GGGATTAAAG GCGTGTGCCA CCATGCCCAG CTATAAAGAA AAATTCTAAT
  GTGGAGGCAG AACCTTGAAC AGAGAATACA GGAACTCAAG AATCAGGAGT AGCAACAAAA
  GGAGATAGAT GAAGCATGGT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147983258	ENSMUSSNP2629825	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52071831					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147900138 () rs orientation: forward

Symbol	Name	Function Class
Rr398848	regulatory region 398848	875 bp downstream
Rr604504	regulatory region 604504	653 bp distal
Rr604505	regulatory region 604505	910 bp distal
Tssr44549	transcription start site region 44549	1006 bp upstream