rs52063600 SNP Detail

Summary

• ID
  rs52063600
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:5806821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATAGGATT ATTGGTAGGT
  TGGCATATGA TACACACTTT CAGCATGACT TCAACTTCCA GTGGATTTGT GATGTAATTC
  ACAGGGAAGC TGGAGTACCT GTATTCCTGT CCAATGTGTC TTGCCTCAAA AACTACACAT
  TGGCTACTTT GATTCAAAAT TTTCCTATTA GGATTAGATA ACTGTTTATT ATTTAACCCT
  R
  GATGTCATAA AACTTCATAC AGATAAAGCA TTCTAAGAAA TTTGAGAAAA TTTTGAAGTT
  ACTACCTACA TTTTAACTGT TGCTTCTGTA AATACTTTAT AGATGGCTAG TGGTCTTCAG
  AAGTGATTTC TCAAGTCAGA TTTCTATATC TGCAAAACTC CAGGCATCCC CTGCCTATAA
  TATACCCCAT TGTCTTTACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss145955271	ENSMUSSNP1608372	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs52063600					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:5806821 () rs orientation: forward

Symbol	Name	Function Class
Rr588338	regulatory region 588338	885 bp distal
Rr588339	regulatory region 588339	810 bp proximal