rs52057190 SNP Detail

Summary

• ID
  rs52057190
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:102297196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATAGTTG TCCCCATGTG
  AGCAAAAGGC CATTTGGAAG GTACTTTGCC TTTTACATTT CTACTGTATA TGTAGGTCTT
  GGTGACTCGT TTGGTGAAAG AGACTGTCAT TATGCACAAG GCAGAAGGAA CCACAACACC
  AAAATAGAAA TTAAAAACAG CAAAGAGAGA GACGCGTGAG CAGGAGTTAG AAAAAAAAAA
  W
  TTTTTTAAGT AACAAATGGA AACCATGATA ATTTGAAACC AGGCTGGTAA CTGACTTTCT
  AAATCAAATT TCCAAGATTG AAATCTGGAT GTCTTAGGTT GCTGCAGTCC CTCTTGGATT
  TGCCAAACAG GAATATCACT CTTGATAAGT TAATTTTGAC AGAGCTGGGA GGTATAGATA
  TTTGCGAATC TCCCACTTAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147131232	ENSMUSSNP1809344	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	A
ss321233623	CHEV_4_102112604	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52057190					SNP	A	T	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102297196 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pde4b	phosphodiesterase 4B, cAMP specific			Intron
				Noncoding-Transcript-Variant
Rr596244	regulatory region 596244			116 bp distal
Rr596245	regulatory region 596245			180 bp proximal