rs52054422 SNP Detail

Summary

• ID
  rs52054422
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129819068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTC TGATGGTCCA GCCTTCCAGC
  Y
  CTGCCCAGCC ACTTCTCCTA CAGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147454496	ENSMUSSNP6629068	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss321316098	CHEV_4_129602519	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52054422					SNP	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129819068 () rs orientation: forward

Symbol	Name	Function Class
Rr600383	regulatory region 600383	1715 bp distal
Rr600384	regulatory region 600384	206 bp distal
Rr600385	regulatory region 600385	1166 bp proximal
Rr600386	regulatory region 600386	1521 bp proximal