rs52049656 SNP Detail

Summary

• ID
  rs52049656
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:21986875 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      G GAAATCGGGT CCCCTCCCCC TTCCTTCATA ACTGAGTGTT
  GCAACAGTAA AATTTGAGCT TTGATCAGAA TAACTGTCTT GGCTACATTT CTTTCTCTCG
  A
  CACCTAGCCC CTCTTCTCTT CCAGGTTTCC AAAATGCCTT TCCAGGCTAG AACCCAGGTT
  GTGGTCTGCT GGCCGGACAC AACACCTCAT CTTTTGTTCA T                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145299447	ENSMUSSNP3976574	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52049656					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:21986875 () rs orientation: reverse

Symbol	Name	Function Class
Gm31813	predicted gene, 31813	within coordinates
Rr367415	regulatory region 367415	1680 bp upstream
Rr574163	regulatory region 574163	393 bp distal
Rr574164	regulatory region 574164	131 bp proximal
Rr574165	regulatory region 574165	1889 bp proximal