rs52049220 SNP Detail

Summary

• ID
  rs52049220
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:15640830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATTTATT TATTTACTTA
  TTTATTTACT TATTTAATTA TTTTGGTCCT GATTTTTCCT TTTTAGAGAG TCCGGTTTTT
  CTTGTTCTTT TTGCTTGTCA CACTCACACT TGAACACAAC AGTTCGCATA TCATTGTTAC
  ATCTATTTTT TTTTTAAATT CATTGTACAA GAAACACATT GTTGAGAATG TGCTGCACAT
  Y
  TATTTCAGAA TGACTGGGAA GAATGAATCA CTTGTCTTAG AATTTATTGC ATTCATTTAT
  TGTAGCATTT CATGTACATT TGCATGTCAT TAAGATTAAG CAGGTGAGAT GTGTGTGTGT
  GTGTGTGTGC ATGTGTGTGT GTGTATATAT ATATATATAT ATATATATAT ATTTATATAT
  GGAAAGTGAG GAAATTTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60865392	NES15989567	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52049220					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60865392	NES15989567	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15640830 () rs orientation: forward

Symbol	Name	Function Class
Gm36352	predicted gene, 36352	1074 bp upstream
Rr626670	regulatory region 626670	1610 bp distal
Rr626671	regulatory region 626671	501 bp distal