rs52048242 SNP Detail

Summary

• ID
  rs52048242
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:69663174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGAC GTAGTTAACA GTCATACATT
  S
  TTTTTGTTAA GATTTACATC TTATT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135271362	ENSMUSSNP6127815	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
ss320793811	CHEV_3_69559763	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52048242					SNP	G	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69663174 () rs orientation: forward

Symbol	Name	Function Class
9530051E23Rik	RIKEN cDNA 9530051E23 gene	within coordinates
Rr375162	regulatory region 375162	within coordinates
Rr578222	regulatory region 578222	377 bp distal
Rr578223	regulatory region 578223	484 bp distal
Rr578224	regulatory region 578224	573 bp proximal
Rr578225	regulatory region 578225	810 bp proximal