rs52044826 SNP Detail

Summary

• ID
  rs52044826
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:143889129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGGGAAGGC AAGCCCCTGC CCCTACTTCC TGCTTCCTCA
  GCCCGAATTC TTCTTCTCTG CCTGGCGCTG CTTCCTCCTC TTCTCTGGCA CTGAAGGCAG
  R
  GGAAGGAGGA ACGGACAAAT CGAGAGGTTT AAAATGTGTC TGTTTTGGTA CACCCATGCT
  TACCCATGCT CACAGCAGCT TTATTCATGA TAGCTGAGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147779571	ENSMUSSNP5582452	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52044826					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:143889129 () rs orientation: forward

Symbol	Name	Function Class
Banf2	BANF family member 2	Intron
Gm75473	predicted gene, 75473	794 bp upstream
Rr566365	regulatory region 566365	805 bp distal
Rr566366	regulatory region 566366	668 bp distal