rs52044793 SNP Detail

Summary

• ID
  rs52044793
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122207818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCAGCTT ACTAGCGGGG
  GATTGCCACG ACACCAAATC CATGGCAGGA ACCTCGAGGG GAATGTTCTG GAAAACACTG
  CAAGCCTTCT TGCCATGGTC TGCCTCGGGA GCTGATATGC CTGGACCACT GATTTATTGT
  ACATTAACTT CAGGGGCTTC TCCGGCTCTC GTTCTTTCTG CAGCTGCGCA TGCTCAGGTT
  W
  TTTTCTGGTT GGGTCTCATC GTCACAGCTG CGTGCCACTC TTGTTCCTTT TGTTTCTTGG
  TTAGGACTCT GCAGAGCTGA AACTTCAGGC ACCCTTCTAG CTTAATGTGC AGTTTGCCCC
  GTGCCTGCTG CAGCTGCCAG TCAACACATG ATGTCAGTGG GACAGGACTC AACACATTCC
  TTTGTGAATC CACAAAGTTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60442574	NES15946491	PERLEGEN	MM_PANEL2	f	SNP	A		T	A	T	T	T	A	A	T		A	A	A	T
ss135741136	ENSMUSSNP3105057	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T					A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52044793					SNP	A	A	T	A	T	T	T	A	A	T	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60442574	NES15946491	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122207818 () rs orientation: forward

Symbol	Name	Function Class
Rr584324	regulatory region 584324	within coordinates