rs52042030 SNP Detail

Summary

• ID
  rs52042030
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:42027571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATTGAAGT GATGCTATCA
  AGATCAAGAT CAGTTTGACA ATCTACATCA AGAACTTAAA GAAGTGATCA AGGATAGGAG
  CAGAATCAGC CATACAGGGA AACCAGTGCC TGGGATCTGA TCGCCAGGCA GGCTGTACAT
  TCCTCAAGAG TTTTTTTTTG GGAAAATGCA CAAATTGAAA CTGGAATGGG AAAGTCTTTC
  S
  GGATGTGATC TTTACCTTAC TATCAGAGAA AAGGGCCGAA TTGGCCTGAA AGGTTGTCCT
  TGTTGATGGG GACGTGAATA GCTCAGGACA GGCAGTCCTT ACTAAAATGT CACCCGGTGC
  CTTAGTCCTC CCAATAACGC TGATGCCAGA GGAGGGGAGG TCTGCTTCAG AAATCCCAAA
  TCGTGCAATT ATTCCTCTCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60395664	NES15895185	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52042030					SNP	G	G	G	G	G	G	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60395664	NES15895185	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:42027571 () rs orientation: forward

Symbol	Name	Function Class
Rr576014	regulatory region 576014	1421 bp proximal
Rr576015	regulatory region 576015	1506 bp proximal