rs52041709 SNP Detail

Summary

• ID
  rs52041709
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122208495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAAATATTA AACAGCAATA ACTAAGACAA ATGTATGATT
  AGCAACAGCA GCAAATACAA GAGGAGCAGG GGACCTTGTG CATGTGTGAC CCATGGAAAG
  R
  GCAAAGGAAG GCTTTCTGCA GAGCAGGGCA TCTGAGCTGA GACCTGCTTA TTTAATCTGC
  TTTCACATCG GCAACAAGGG GGCAATGACA CCACCCCCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135741165	ENSMUSSNP5118722	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss320911430	CHEV_3_122117764	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52041709					SNP	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122208495 () rs orientation: forward

Symbol	Name	Function Class
Rr584324	regulatory region 584324	337 bp distal