rs52040382 SNP Detail

Summary

• ID
  rs52040382
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191569217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACATTAGT CCTGGAAAAG
  GTGAACTGTG TTTAAGGGCC TAGACCAGTC CTGAGCAAAT GTATTCCATG TGGCCCTGAG
  GAGGATCCAA AAGGGCTTGG GTTATAATGG ATGGGCTCTA ATAAAATGCA AATATTTAAA
  CTAAGGGGGG GGAGCATGAG TGAAACCAAG AATAAATCCA ACATAATTGC AGTAATTACA
  M
  CCGGAGCCAA GCCTTGAGGG AGCAGAGCGC TCACTGAGGT AAGGCAGGAG AGACATCTCA
  GGGTGTGGCA TAGGCCTTTG CTGAACCTCC GCCTGCAATG GACCGGGCAG TATTGTCTGG
  AAATCTTGTT AAAATATAGA TTCAATTCAA CAGATGCAGG GTGGGCCAGA TAATCTGTCC
  TAACTGCTCT AGGGTAGACT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60360510	NES15857507	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs52040382					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60360510	NES15857507	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191569217 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1227	CpG island 1227	1981 bp distal
Rr426232	regulatory region 426232	1806 bp distal
Rr426234	regulatory region 426234	646 bp proximal
Rr426235	regulatory region 426235	1724 bp proximal