rs52040234 SNP Detail

Summary

• ID
  rs52040234
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101869319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTATTTTTT AAAGAATTAT TTATTTCTTT TATGTATAAT
  AGTACACGGT AGCTATCTTC AGACACACCA GCAGAGGGCA TTGTAGATGG TTGTGAGCCA
  Y
  CATGTGGTTG CTGGGAATTG AACTCAGGAC CTCTGGAAGA GCAGTCAGTT CTTTTAACCA
  CTGAGCCATC TCTCGAGCCC CAGTTTTTCT TACTAGAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147097817	ENSMUSSNP6559322	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320433834	CHEV_2_101879131	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52040234					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101869319 () rs orientation: forward

Symbol	Name	Function Class
Ldlrad3	low density lipoprotein receptor class A domain containing 3	Intron
Rr367252	regulatory region 367252	438 bp upstream
Rr561615	regulatory region 561615	1325 bp distal
Rr561616	regulatory region 561616	1919 bp distal
Rr561617	regulatory region 561617	16 bp distal
Rr561618	regulatory region 561618	75 bp proximal
Rr561619	regulatory region 561619	666 bp proximal
Tssr19089	transcription start site region 19089	621 bp upstream
Tssr19090	transcription start site region 19090	642 bp upstream
Tssr19091	transcription start site region 19091	672 bp upstream