rs52033912 SNP Detail

Summary

• ID
  rs52033912
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101471137 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCACACA CTGAAACTCA
  ACTGATCATA ATCAAAAGAA TAACACATTG CCAAAAGAGG AAGACTTTAG AAAGCCTGGA
  CTTATTCAAA CCATGTTTCA TATAGAGAAA ATCTGACTGA CGTTTTTAGC AAGGTATTAA
  ATCTGCTTTT GGGCAGTAAG AAAATGTGGA CTTTAAAAAT CTGTAACCTT GAGATTACAT
  R
  GAAAAGCACT AAGGCTATAA ATGACTCTTA ATTAAAAAGT AAAAATAAAC AACCAGAGCT
  GGCTCTAGAT AACTAAGCAA GCATGACTTT ATTATACTTA ATAGGTAGCT GTAGCTAACA
  GGTGCATTCT CTAACTTCAT TATTGAAAAA TTTATGACAC CAGATGACCT CCTAGACACT
  GAAGGTGACA ATACTGAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147079198	ENSMUSSNP5798930	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
ss320429685	CHEV_2_101480949	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52033912					SNP	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101471137 () rs orientation: forward

Symbol	Name	Function Class
Rag1	recombination activating 1	mRNA-UTR
Rr561526	regulatory region 561526	645 bp distal
Tssr25364	transcription start site region 25364	669 bp upstream
Tssr25365	transcription start site region 25365	556 bp upstream
Tssr25366	transcription start site region 25366	475 bp downstream
Tssr25367	transcription start site region 25367	771 bp downstream