rs52033339 SNP Detail

Summary

• ID
  rs52033339
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129084816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAA TTCACTGAGT TATTTGGAAA
  R
  CAAAAAACAA AAAAACAATA ACCAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147584194	ENSMUSSNP6572341	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss320504468	CHEV_2_129068632	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52033339					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129084816 () rs orientation: forward

Symbol	Name	Function Class
Rr373844	regulatory region 373844	within coordinates
Rr564887	regulatory region 564887	965 bp distal
Rr564888	regulatory region 564888	45 bp distal
Rr564889	regulatory region 564889	114 bp proximal
Rr564890	regulatory region 564890	853 bp proximal
Rr564891	regulatory region 564891	1742 bp proximal
Rr564892	regulatory region 564892	1757 bp proximal