rs52030823 SNP Detail

Summary

• ID
  rs52030823
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145811693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACCACTT AAAACAATGG
  TCTTGGACGA CAGAGATACA ATTGATGCTT TGATTAGTAT TTTATGCTTC TGACATTTTT
  TGGGGGAAAT TTCTATTCAG TCTTTCTATC CCTCACTCCT GCCACCGCTG CCCTATGTGT
  ACACACTACT TTTTGACTTG ACTTTTGGCC ATCAAACTCA GATGCTGTCA TGGTTTGAAT
  W
  TGCTTGGCAC AAGGAGTGGC ACTATTTGAA GGTGTGGCTT TGTTGGAGTA GGTGTGTCAC
  TGTGGGCGTG GGCTTAAGAC CCTGGCTTCC TGGAAGTCAG TCTTCCACTA GCAGCCTTCA
  GATTCAAAGA TGTAGAACTC TCGGCCGGGC AGTGGTGGTG CACGCCTGTA ACCCCAGCAC
  TTGGGAGGCA GAGGCAGGTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss136042045	ENSMUSSNP4573296	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52030823					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145811693 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnai3	dynein axonemal intermediate chain 3			Intron
				Noncoding-Transcript-Variant
Rr586924	regulatory region 586924			1207 bp proximal