rs52030752 SNP Detail

Summary

• ID
  rs52030752
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:125510069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATTCTGGCA ACTCACAGGC GACAGGAGTT ATCCCTATCT
  TGCAAAGAAA GACCCAAAAT CTTAGACAAG TCAGTACATC AAGCTCTTGA CTCTAACGTT
  Y
  AACACTAGCC TTCAGTGTCT TCCTGACAGG AGGGTAAAAC TCCACTGGTG GGGGGAGAGG
  GGCTAATACC AAGCCAGATC ATCATGTAAA CTCCAAGCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147484322	ENSMUSSNP6558159	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52030752					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125510069 () rs orientation: forward

Symbol	Name	Function Class
Rr397269	regulatory region 397269	527 bp downstream
Rr564257	regulatory region 564257	1111 bp distal
Rr564258	regulatory region 564258	544 bp distal
Rr564259	regulatory region 564259	912 bp distal
Rr564260	regulatory region 564260	101 bp distal
Shc4	SHC (Src homology 2 domain containing) family, member 4	Intron