rs52029249 SNP Detail

Summary

• ID
  rs52029249
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41303388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCAGGCT GTTGTGTGCA
  CTCTGACACT GGTGCCGGGA ACCCCACCCA GACCCACTGC CAGAACAGGA AAAAAAAATC
  TAAAACAGGG GCTGTTTCTC CAGTCCCTTG GCCTCGGTTT TTAAAACCAA GCTTTTAAAG
  CTCTTGGAGT TATTTTGAAG TAGCTGTAAT GGTGTGGAGC CAGGGTTATC TGAAGCTGTC
  Y
  CAGTGGTCAG GAGTATTGAC CCATTTCCAC CAGCAGGGGG CAGTTGGCAT TTCTCCATTT
  GTTTCTTGGT ATGGAAGCAA TGAGGGCCCT GGCTGGCTAC CACAGCTGCC CAAATTGGGT
  AGACAAAGGG CAACAGAACC AGCTGAGGGG GTACTGTTGT TGTTTTGTAA ACAGTCTCTC
  TCTCTCTCTC TCTCTCTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60398551	NES15903414	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52029249					SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60398551	NES15903414	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41303388 () rs orientation: forward

Symbol	Name	Function Class
Gm66487	predicted gene, 66487	within coordinates
Rr575933	regulatory region 575933	213 bp distal
Rr575934	regulatory region 575934	within coordinates
Rr575935	regulatory region 575935	26 bp proximal