rs52027654 SNP Detail

Summary

• ID
  rs52027654
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95292456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAGACTAAA AACACACAGG TAGGAACTTA AAGAACCAAG
  CTCAAGGGTC AGAAGGCACA TGAAGGATAT GCTCCAGTGA ATGACGAACC GAGGCAGACT
  Y
  GTATACCACA TCCTCCATGA CTGATTTAAG GCTTAAAGCA ACTTTGAAAT CATATCTTTA
  AGTCTTCTTA CACAAAACCA AACAATCCTT TCTTAGTGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss136828301	ENSMUSSNP2059295	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss323100065	CHEV_9_95310822	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs52027654					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95292456 () rs orientation: forward

Symbol	Name	Function Class
Gm8449	predicted gene 8449	266 bp downstream
Gm35915	predicted gene, 35915	1849 bp downstream
Gm37805	predicted gene, 37805	1835 bp downstream