rs52025499 SNP Detail

Summary

• ID
  rs52025499
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:22041430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTAT GTCAGTTGGC AGAGTACTTG
  Y
  CGAATGAGCA CAAAGACCTA GGATC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss134684903	ENSMUSSNP2797126	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320683712	CHEV_3_21886188	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52025499					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:22041430 () rs orientation: forward

Symbol	Name	Function Class
Rr367416	regulatory region 367416	470 bp upstream
Rr367417	regulatory region 367417	952 bp upstream
Rr574182	regulatory region 574182	within coordinates
Rr574183	regulatory region 574183	243 bp proximal
Rr574184	regulatory region 574184	1022 bp proximal
Tssr32754	transcription start site region 32754	550 bp downstream
Tssr32755	transcription start site region 32755	991 bp downstream
Tssr32756	transcription start site region 32756	1026 bp downstream