rs52024647 SNP Detail

Summary

• ID
  rs52024647
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:101468276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCTGGAAC CAAAATCTTT
  CACCCTACAT TATGATAAAT TATATTCTTA ACTAATCTAG TACCCTTGAA ACAAAGGTGG
  TTCAAACTTT CCATAATGCT GTGATAAACT GTCCCCAGTG ACTCAAGTGC AAACAGATTT
  ATTTCACCTC ACAATTCAAA AGCATCCATC ACAGCAAGAC AGGGGCCCAT GAACTCGAAG
  Y
  AACAGGTCAG AAAGCAGAGA GCCATGAATG CTTGGGTAGC TCACTTTCTC CCGGTTCACC
  CAGGCAAGGA TCCCACACGA GGGAACAATG CCACTGACAG AGACCCATTG GTTAGCCCAA
  TGAAAGGATG CTCCCACAGG CACGGCCAGA GGCCTGACTC TCGGATGATG CTATTTCTCC
  AGTTGACAAC TGAGACTAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147079058	ENSMUSSNP5027608	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320429649	CHEV_2_101478088	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs52024647					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101468276 () rs orientation: forward

Symbol	Name	Function Class
Rag1	recombination activating 1	351 bp downstream
Rr561526	regulatory region 561526	1680 bp proximal