rs52023837 SNP Detail

Summary

• ID
  rs52023837
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87655818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTGGCTC GTCCTCTCCC
  ACCGGGGGCA GGGTGCTTGC TGTCTTATCT TTAGCAGCCC GATCCCCCTT CTTGGTTACT
  GCTCCGGATG ACTTCTGGGC CCCAGGACGC GGAGTCCTGG GTGAGGTCCC TGTAGTGCTT
  GGCTCACTTG ACATAGGGGT GCTTTTGGAC CCCTCGAGTG AGAGGCAAGA TGAAACGGGA
  Y
  TCTGTGGGCC TCACCCCTAG GATCTCCACT CAGCCAAGCG ACTCCGCGAC TGCCCTCTCC
  AGGGCAACCC AGCCTGATTG GGTGGGGCTG TGGCCGGAGC AACGGGCAAA GAGTGCACGT
  GGAGGCCCCT GACTCTGCCA GAGCCAGAGC CAGTGGGCGT GGCTAGGCGT AGGGCATAGA
  TGCGTGGAAT CTAGGGCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135467966	ENSMUSSNP5577366	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52023837					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87655818 () rs orientation: forward

Symbol	Name	Function Class
Lrrc71	leucine rich repeat containing 71	mRNA-UTR
Pear1	platelet endothelial aggregation receptor 1	mRNA-UTR
Rr579535	regulatory region 579535	102 bp proximal
Rr579536	regulatory region 579536	483 bp proximal
Rr579537	regulatory region 579537	691 bp proximal
Tssr33946	transcription start site region 33946	22 bp downstream
Tssr33947	transcription start site region 33947	45 bp downstream
Tssr33948	transcription start site region 33948	66 bp downstream
Tssr33949	transcription start site region 33949	88 bp downstream
Tssr33950	transcription start site region 33950	108 bp downstream