rs52017746 SNP Detail

Summary

• ID
  rs52017746
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:130052653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAAAAATAA TCTACCTATT TTTTTTTGTG TGTGTGTATG
  GGTGTTTTGC CTACATGTAT CTATGTACAC CACATGTGTT ACCTTTTGGC CACAAAAGTG
  K
  TTGTCAGGTC CCCTGGAAAT GAAGTTCCAG ATGAGCCTGG ACTTGAACCT GGGTCCTCAT
  CAGGAGCTGC AAGCCCTCTG TGCCTTGGAG TCACCTCTT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135893327	ENSMUSSNP5593406	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52017746					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130052653 () rs orientation: forward

Symbol	Name	Function Class
Col25a1	collagen, type XXV, alpha 1	Intron
Rr585149	regulatory region 585149	869 bp proximal
Rr585150	regulatory region 585150	1288 bp proximal